Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs41276275 | chr5:96237711 | T/C | 3.27E-6 | 489 | 15.83 | 16.92 | 17.7 | KM Plot |
| THCA | rs41285510 | chr14:59797213 | G/A | 1.44E-8 | 487 | 16.37 | 12.62 | 5.45 | KM Plot |
| THCA | rs41289767 | chr1:86249903 | T/C | 4.87E-5 | 480 | 15.93 | 16.13 | 7.13 | KM Plot |
| THCA | rs41297151 | chr10:81807167 | A/T | 0.000253 | 487 | 16.22 | 15.87 | 11.73 | KM Plot |
| THCA | rs41298231 | chr10:81682461 | C/T | 3.34E-5 | 476 | 15.78 | 16.07 | 6.03 | KM Plot |
| THCA | rs41309986 | chr10:81682448 | G/A | 2.68E-5 | 486 | 16.08 | 16.07 | 6.03 | KM Plot |
| THCA | rs41343546 | chr1:45908263 | A/G | 7.15E-7 | 490 | 16.38 | 12.63 | 17.7 | KM Plot |
| THCA | rs4141500 | chr3:127651854 | G/A | 0 | 490 | 16.37 | 14.82 | 6.03 | KM Plot |
| THCA | rs4144383 | chr13:108843486 | C/T | 2.14E-10 | 490 | 13.77 | 17.7 | 15.48 | KM Plot |
| THCA | rs41509648 | chr11:63579982 | A/C | 8.43E-5 | 490 | 16.37 | 11.13 | 23.97 | KM Plot |
| THCA | rs4233498 | chr1:45981080 | A/G | 4.77E-5 | 488 | 10.6 | 16.3 | 16.97 | KM Plot |
| THCA | rs4233730 | chr2:29113567 | G/T | 0.00011 | 490 | 14.3 | 15.22 | 16.07 | KM Plot |
| THCA | rs4233731 | chr2:29161010 | G/A | 0.00011 | 489 | 14.3 | 15.22 | 16.13 | KM Plot |
| THCA | rs423928 | chr15:65835802 | A/G | 0.000119 | 483 | 15.98 | 15 | 16.27 | KM Plot |
| THCA | rs4242467 | chr8:52496221 | C/T | 9.15E-6 | 490 | 15.23 | 16.57 | 22.53 | KM Plot |